CDS

Accession Number TCMCG015C16919
gbkey CDS
Protein Id XP_027114169.1
Location complement(join(43329019..43329102,43329391..43329459,43330177..43330224,43330476..43330553,43330646..43330759,43330848..43331039,43331117..43331244,43331376..43331432,43332134..43332257,43332632..43332697,43332895..43333050,43333179..43333235,43333878..43333922,43334226..43334318,43334745..43334820,43336516..43336642,43337687..43337750,43337868..43337926,43338194..43338272,43338407..43338496))
Gene LOC113732540
GeneID 113732540
Organism Coffea arabica

Protein

Length 601aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027258368.1
Definition general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1 [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category KL
Description RNA polymerase II transcription factor B subunit 1-1
KEGG_TC -
KEGG_Module M00290        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K03141        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03022        [VIEW IN KEGG]
ko03420        [VIEW IN KEGG]
ko05203        [VIEW IN KEGG]
map03022        [VIEW IN KEGG]
map03420        [VIEW IN KEGG]
map05203        [VIEW IN KEGG]
GOs GO:0000428        [VIEW IN EMBL-EBI]
GO:0000439        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005667        [VIEW IN EMBL-EBI]
GO:0005675        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006360        [VIEW IN EMBL-EBI]
GO:0006366        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006468        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016310        [VIEW IN EMBL-EBI]
GO:0016591        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030880        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032806        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044798        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055029        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061695        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070816        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090575        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902554        [VIEW IN EMBL-EBI]
GO:1902911        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCAGATAAGCAGCAGCAGGTGGTGGTTAAGAGAGCCAGGCACAAGTCATCTGTGAAGGACCCTGGAACACCTGGCGTTTTGAAATTGACTAAAGATAGGTTTACTTTCATGCCAAATGATCCGAGTTCACCTGTGAAACATAATGTAGAGTTCAGAACAATTAAAGGGCACAAATTCACCAAGGATGGAACTAAGCAAGCGCTCCTTAACCTTACTCAGGATCAGGGTGGCAATTACATTTTTGAGTTTGAGAACTTCCCAGACCGCAATGTTTGCAAGGATTTTGTAGCCTCAGCTATTGCACTATCCGGAGAAGCTGGGAGAACAGTTCCTGAAAAATCTGCTGTTCCGATTCAAGATGAGCAACTTAGTGCGGCTGAAATGGAGCGTCGTATTAAGCTACTGCAGGAGGATAGTGATTTACAGAAACTTCACAAGCAATTTGTGATTGGAGGTATCCTATCTGAAGCTGAATTCTGGGCAACGAGGAAGAAGTTGTTGGAGCAGAATTACAGCAGGAGGCCAAAGCAAAGAGTGGCATTAAAAAATGATATGTGGAGTACCAAACCTTTAGCTGATGGTCAGTCCAACAGAGTTACATTTAACTTAACACCAGAGATTATCCTTCAGATTTTTGCAGAGAAACCAGCTGTTCGCCAAGCATATCTCAATTTTGTGCCAAACAAGATGACTGAAAAAGAGTTTTGGACTAAATACTCGCGAGCGGAATACCTCCATAGTACAAAAAATGTCATTGCTGCAGCAGCAGAGGCTGCAGAAGATGAGGAACTTGCCGTATTTTTGAAGCAAGATGACATGTTAGTTAATGAAGCTCGGAAGAAGATTAGGCAGGTGGATCCTACTTTGGACATGGAAGCTGATGAAGGAGATGATTACATGCATCTCCCGGACCATGGGCTACCTCGCAATGACAACAAGGATGTTTTAGACTCGCAATATGAACCATACCGAAGATCTTTCTCACAACACCTCAACCAGCATGCAGCAGTCGTTCTTCAAGGGAGAGTTATAGATGTTGAGCTAGGAGATACAAGATCTGTAGCTGAAGCACTTGCAAGGACGAAACATGCTGAGTTAGCTAAAGATGCATCTGATGTGTACTTGGACAAAGAGCGGTTAGAGAGGATTTCTCGAATGACTGAGATTGAGGATCTTCAGGCACCTCGTGACCCTGCAGTTGCACCACTTAGTATTAAGGATCCTCGTGACTACTTCGATTCTCAGCAAGCAAATGCTTTCAGCACTCTTGGTGATACTGTTTCTGGTGCAAAACAATTAAAATGTAGTGTGAGTACTCGTGAAGCATATTGTTCTTTGAAGGAGTGCATCTCCGAGATTAAATTTCAGGGTTTGACTGAGCCCACAATTAATTCAGAAGTTGCTTTTAAGGTTTTGAATGGATTGGCTCAGAATATTTCAAGTAACAAGTATCATCTTGGGAGGAATCCAAACGAGAGTATTTTGGATAGTTTGCCAAAAATCACCAGAGAGGAACTATTACTTCACTGGTCATCCATCCAGGAGTTATTGAAGCACTTTTGGTCATCATATCCTATTACAACCAAGTATCTTTTAACTAAGGCAACCAAATTGAAGGATGCTATGTCCCAGATATATCCTAAGCTACAGGAGATCAAGGAATCTGTGCAGTCAGACTTGCGACATCAAGTTTCGCTTCTTGTGCAACCAATGCTTCAGGCCCTAGACGCAGCTTTTGCACATTATGATGCAGATGTACAGAACAGATCGGCAAGGAGTGGGGAGAGACCAAATGGTTTCTAA
Protein:  
MADKQQQVVVKRARHKSSVKDPGTPGVLKLTKDRFTFMPNDPSSPVKHNVEFRTIKGHKFTKDGTKQALLNLTQDQGGNYIFEFENFPDRNVCKDFVASAIALSGEAGRTVPEKSAVPIQDEQLSAAEMERRIKLLQEDSDLQKLHKQFVIGGILSEAEFWATRKKLLEQNYSRRPKQRVALKNDMWSTKPLADGQSNRVTFNLTPEIILQIFAEKPAVRQAYLNFVPNKMTEKEFWTKYSRAEYLHSTKNVIAAAAEAAEDEELAVFLKQDDMLVNEARKKIRQVDPTLDMEADEGDDYMHLPDHGLPRNDNKDVLDSQYEPYRRSFSQHLNQHAAVVLQGRVIDVELGDTRSVAEALARTKHAELAKDASDVYLDKERLERISRMTEIEDLQAPRDPAVAPLSIKDPRDYFDSQQANAFSTLGDTVSGAKQLKCSVSTREAYCSLKECISEIKFQGLTEPTINSEVAFKVLNGLAQNISSNKYHLGRNPNESILDSLPKITREELLLHWSSIQELLKHFWSSYPITTKYLLTKATKLKDAMSQIYPKLQEIKESVQSDLRHQVSLLVQPMLQALDAAFAHYDADVQNRSARSGERPNGF